Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015853159.1_cds_XP_016512137.1_24809
CDS Infomation

[gene=LOC107829186] [db_xref=GeneID:107829186] [protein=mediator of RNA polymerase II transcription subunit 17-like] [protein_id=XP_016512137.1] [location=join(24172..24260,24378..24621,27262..27375,27566..27651,27782..28166,28277..28738,28822..29133,29602..29925)] [gbkey=CDS]
Sequence

ATGAACGGCGATCTCGAAATCTCCGTCGATAAGCTTCCAATCAAGCGTCTAGAATTTATC
GAAGAAGGCGGCGCCGAACGCTTCCCTTCGGATATAGGATACGATGAGAAAACGGTGAAT
TTGATAAGGAGAATTGATTTTGCATGGGCGGTGGAGAGAGAGGAGCCTAAGAGTAAGAAG
CAGAAGAAGAAAAGCAGTAGTAGTAGCTCTACCTCTACATCTTCGAAGGAGACAAGCAGT
AGCAATCAGCAGCCATGGCAATGGCAGACGTTGGTGGAGAATTTGCGGTTGGCTCATCAA
GAGCTTCAAGTCATTATCGATCTCATTCACACTGTGGAGGCAAACGATGCAGTGACAGTG
GCTGGCATGACCAGGCCAAAGCAATTGCCTAACGAGCATCTGTCGGACCTTGCTGTCTCC
ATGGCTACCAAGCTGCAATGCTTCCGTCATTTGGGGAAATATTTTAAGCAGTCTGCTAAA
GCATTGGAACAACAAGTTGCTAGAGAAGCAAGATTCTATGGTGCTCTTATCAGATTGCAG
CAAAATTGGAAGGTTAAATGGCATCGGATGGTTGCTGCTGCTTCTGGAAATGAAGGGTTT
TACATTGATTTATTTGACAACTCATTATATGATCCGGCAGTTGCATTTCGCCCATCTTCT
GCATCTGTGGTGCGTGTTGAGCATGACCCAGCTGGGATGCTGGCAGTGAATTTGCCGTCA
AATTCCTGCCGCACTCTTCAATTTGAGTTTCTCGGTGCAAGAGCACCTAGTGGCATCATA
AAAGAAAGCAGAACAAAACCAAAGGGCTCTTTTGAGGTTTCTTCTGGAGAAACTAAGAGA
GAAAAAACTGATGATGAGCATGTGAGAGAAACTCACTCAACCCTCCGTGAAGTTCATCGA
GCAATCTTTGATGAGCAGGTGTTTGATTTGGTTAATCGTGAAGCATTTAATCCAGCTTTG
GGTGTTGACGTGACAGGAATACAAGAAAACTTGTTACGTTTAAGCATAGGTCAAGGAGCT
TCTCTGTCAATTTCACTTGTGCCATCTACTGAAGATGATCAGACTGCTAATGCTGTGGCT
GATGAGCATTCTGAAACTGCTATTGTGCCTCTTGAATCAGTTGATGCTTCAGAGCTTGAT
GAAGGGAAACTTGACTTTAAGAAGTTGGGGTTTCCCAATCGAATTAGCTTTGAAATTTAT
TTGCAACAAATTTTTCATGAACATGTGTTTATAAAAGCCAAAAAGAGATTATCATCTTTG
GGTAAAACTCAAACGTCTGCTCCGCCCACGAAAGATGGCCCTAATCTTTTGGGACATTTC
TGCGTCTCTCTAGCTCATAGGATCTTCTCAAACAAAGTCCTTGCGGAGCTTGAAAGTCTG
GTTAGCAGGATACCATATGTCCAGTTGATATCGCATCCCAGTTGGCATTCTCGAAGATCA
TCATGGACGCTCTCCATGAAAGTACCTGATTCGATTCTCCACGCAGGAAGCCTGTCTCAC
TCATCTGACTATGTAAAGAATGTGAAATCTCACTTTCGTACGAAAGTCATGGTACGTGAT
GATTGCATCAGTCTGGAAGGGGAAGGTGCTCCTAATGTTGTTGGCCTCTTCAAAGGGAAG
CCTGATATTACGTGCCCCATGAACAGATATGACTGTGACTTGTCAGATCTTCCAATGATA
CTGTTGCAGCAGGTTGCCAGCCAGGTGATACGGTGGCTTCACGAGGAAGCTCTTATGGTT
GGTATCAAAGCAAACCGGGACTTCTTATCCTTGTCATTTGAGCTAGAGCAAGGCGAAACA
CTCTGTCTGGTGGCACATGTGGACCCTGAAGATCTTCAAGGATGTATTTCATGGTGGTTG
GTGATGGACGACGAATTCTCTGAAGAAAGCAAACTTAATATGGACATCAACAATGGTGAA
TCAGAAACAAGGAAATTTCTAGGTTACTTATCTTTGGAAGTGTTATACTCGACCTTAATG
GATATGGTAAGCCTAAGTAGTACTGCAGGCCATTGA

Peptide Sequence

PEP ID

XP_016512137.1
PEP Infomation

PREDICTED: mediator of RNA polymerase II transcription subunit 17-like [Nicotiana tabacum]
Sequence

MNGDLEISVDKLPIKRLEFIEEGGAERFPSDIGYDEKTVNLIRRIDFAWAVEREEPKSKK
QKKKSSSSSSTSTSSKETSSSNQQPWQWQTLVENLRLAHQELQVIIDLIHTVEANDAVTV
AGMTRPKQLPNEHLSDLAVSMATKLQCFRHLGKYFKQSAKALEQQVAREARFYGALIRLQ
QNWKVKWHRMVAAASGNEGFYIDLFDNSLYDPAVAFRPSSASVVRVEHDPAGMLAVNLPS
NSCRTLQFEFLGARAPSGIIKESRTKPKGSFEVSSGETKREKTDDEHVRETHSTLREVHR
AIFDEQVFDLVNREAFNPALGVDVTGIQENLLRLSIGQGASLSISLVPSTEDDQTANAVA
DEHSETAIVPLESVDASELDEGKLDFKKLGFPNRISFEIYLQQIFHEHVFIKAKKRLSSL
GKTQTSAPPTKDGPNLLGHFCVSLAHRIFSNKVLAELESLVSRIPYVQLISHPSWHSRRS
SWTLSMKVPDSILHAGSLSHSSDYVKNVKSHFRTKVMVRDDCISLEGEGAPNVVGLFKGK
PDITCPMNRYDCDLSDLPMILLQQVASQVIRWLHEEALMVGIKANRDFLSLSFELEQGET
LCLVAHVDPEDLQGCISWWLVMDDEFSEESKLNMDINNGESETRKFLGYLSLEVLYSTLM
DMVSLSSTAGH

Transcript Sequence

Gene sequence data has not been registered.